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How to handle database changes made by an automatic upgrade script?

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I've asked my question on stackoverflow.com 2 days ago but nobody answered, so I'm asking here.

We're a team of developers working on a web application that also use Wordpress as part of it. We want to use Liquibase to track our database changes. But not all of the changes will be handled manually. Mainly, all changes during installation and upgrades of Wordpress will be made by the automatic update script of Wordpress.

From a Liquibase  user point of view, 
Can I just ignore them? and put only my own changes in Liquibase changelog file?

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